367
98%

Ran 24 Jul 2017 06:34PM UTC

Jobs 1

Files 22

Run time 1s

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Build # 367

Build Type

push

travis-ci

Committed by

thermokarst

Commit Message

ENH/BUG/MAINT: support comments/blank lines and better validation in "per-sample sequence" formats (#136)

All changes in this commit are related to the "per-sample sequence" formats.

Several changes:

- Comments and blank lines are now supported in "per-sample sequence" manifest formats, including sniffers and transformers.
- Duplicate samples are now additionally detected and disallowed in "relative path" manifest formats (previously this validation only happened in the "absolute path" manifest formats).
- Error messages reported by transformers are both more precise and accurate.
- Refactored sniffer and transformer code to reduce redundancy and perform consistent validation and parsing in all sniffers/transformers.
- Added unit tests, increased coverage to 100% for "per-sample sequence" formats, and made existing unit tests and test data more robust.

Fixes #126.
Fixes #129.
Fixes #132.

Pair-programmed with @jairideout.

Run Details

821 of 841 relevant lines covered (97.62%)

0.98 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	367.1	24 Jul 2017 06:34PM UTC	0	97.62	Travis Job 367.1

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