bigdatagenomics / adam / 2276
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 1min
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Pull #1627

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/f1769fdf1eb841a2460049185c359c0d1a0c6cd9">f1769fdf1<a href="https://github.com/bigdatagenomics/adam/commit/f1769fdf1eb841a2460049185c359c0d1a0c6cd9">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b5b9a5f48efdae631919e307df679a6b5b8dbd24">b5b9a5f48</a>">b5b9a5f48</a><a href="https://github.com/bigdatagenomics/adam/commit/f1769fdf1eb841a2460049185c359c0d1a0c6cd9"> into 9bc5e1538">9bc5e1538</a>
Pull Request #1627: [ADAM-1615] Add transform and transmute APIs to Java, R, and Python

70 of 70 new or added lines in 10 files covered. (100.0%)

6198 of 7426 relevant lines covered (83.46%)

6.64 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
0.0
 adam-apis/src/main/scala/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.scala
13
68.82
 -2.52% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
49
0.0
 adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
77.78
 5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
95.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.81
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
86.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
67.53
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
62.26
 -0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
94.47
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
91.84
 0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
92.73
 0.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
7
89.06
 0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
9
88.74
 0.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
10
85.54
 0.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
19
75.0
 0.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
42
82.68
 0.05% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2276.1 140
83.03
2 2276.2 140
83.03
3 2276.3 140
83.02
4 2276.4 140
83.02
5 2276.5 140
83.02
6 2276.6 140
83.01
7 2276.7 140
83.02
8 2276.8 140
83.01
Source Files on build 2276
Coverage ∆ File Lines Relevant Covered Missed Hits/Line