bigdatagenomics / adam / 2857

DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 1min
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jenkins

fnothaft 
[ADAM-1490] Add asSingleFile to saveAsFastq and related. (#1621)

Add asSingleFile to saveAsFastq and related. Resolves #1490.

15 of 15 new or added lines in 1 file covered. (100.0%)

6177 of 7357 relevant lines covered (83.96%)

6.68 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
4
82.63
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
72.22
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
62.5
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
82.05
 0.42% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
95.35
 1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
60.49
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
86.67
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
67.53
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
82.63
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
90.74
 -1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
94.37
 -2.82% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
3
62.74
 -0.94% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
63.46
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
4
88.35
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
Jobs
ID Job ID Ran Files Coverage
1 2857.1 138
83.54
2 2857.2 138
83.54
3 2857.3 138
83.52
4 2857.4 138
83.52
5 2857.5 138
83.54
6 2857.6 138
83.53
7 2857.7 138
83.54
8 2857.8 138
83.53
Source Files on build 2857
Coverage ∆ File Lines Relevant Covered Missed Hits/Line