bigdatagenomics / adam / 2269
85%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 137
Run time 2min
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Pull #1605

jenkins

GitHub 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/90b0b6cd6ecfdcbe2b521b4ffc71a5f92c27b5a1">90b0b6cd6<a href="https://github.com/bigdatagenomics/adam/commit/90b0b6cd6ecfdcbe2b521b4ffc71a5f92c27b5a1">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/6f3fe7473a3ad2aff8f3d09137d82edc4a6bc5e1">6f3fe7473</a>">6f3fe7473</a><a href="https://github.com/bigdatagenomics/adam/commit/90b0b6cd6ecfdcbe2b521b4ffc71a5f92c27b5a1"> into 640c44bae">640c44bae</a>
Pull Request #1605: Adding examples of how to use joins in the real world

6160 of 7269 relevant lines covered (84.74%)

6.74 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
89.32
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.17
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
61.73
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
68.83
 3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
86.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
2
94.19
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
65.38
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
81.77
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
5
93.33
 2.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
5
88.89
 -2.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
41
94.47
 3.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
53
83.04
 0.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
66
62.26
 0.34% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
83
71.66
 0.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2269.1 137
84.3
2 2269.2 137
84.29
3 2269.3 137
84.3
4 2269.4 137
84.29
5 2269.5 137
84.25
6 2269.6 137
84.25
7 2269.7 137
84.23
8 2269.8 137
84.23
Source Files on build 2269
Coverage ∆ File Lines Relevant Covered Missed Hits/Line