bigdatagenomics / adam / 2265
85%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 55s
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Pull #1605

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/8704718c4e92aedf988f0f436a009a409056e1fc">8704718c4<a href="https://github.com/bigdatagenomics/adam/commit/8704718c4e92aedf988f0f436a009a409056e1fc">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/a49cd0409ffda9da9bb369ea4ec6972e43841587">a49cd0409</a>">a49cd0409</a><a href="https://github.com/bigdatagenomics/adam/commit/8704718c4e92aedf988f0f436a009a409056e1fc"> into 961f90ade">961f90ade</a>
Pull Request #1605: Adding examples of how to use joins in the real world

5966 of 7101 relevant lines covered (84.02%)

6.72 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
65.63
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
61.73
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
94.37
 -1.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
85.32
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
98.87
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
72.22
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
94.19
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
89.17
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
65.38
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
59.46
 -5.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
3
81.91
 -0.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
87.38
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
73.33
 -20.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
5
59.39
 -2.54% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
5
61.04
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
6
92.0
 1.09% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
21
82.5
 -0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
50
92.0
 1.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
79
71.43
 0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2265.1 138
84.02
2 2265.2 138
84.02
3 2265.3 138
84.0
4 2265.4 138
84.0
5 2265.5 138
84.02
6 2265.6 138
84.02
7 2265.7 138
84.0
8 2265.8 138
84.0
Source Files on build 2265
Coverage ∆ File Lines Relevant Covered Missed Hits/Line