2844

Ran 21 Jul 2017 10:27AM UTC

Jobs 7

Files 137

Run time 1min

Badge

Embed ▾

pending completion

Build # 2844

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-882] Add R API.

Resolves #882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.

Coverage Stats

6124 of 7269 relevant lines covered (84.25%)

5.9 hits per line

Coverage Regressions

Lines	Coverage	File
5	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala

Jobs

ID	Job ID	Ran	Coverage
1	2844.1	21 Jul 2017 10:27AM UTC	84.25
2	2844.2	21 Jul 2017 10:27AM UTC	84.25
3	2844.3	21 Jul 2017 10:27AM UTC	84.23
4	2844.4	21 Jul 2017 10:27AM UTC	84.23
5	2844.5	21 Jul 2017 10:27AM UTC	84.23
6	2844.6	21 Jul 2017 10:28AM UTC	84.25
7	2844.7	21 Jul 2017 10:28AM UTC	84.23

Source Files on build 2844

Detailed source file information is not available for this build.

bigdatagenomics / adam / 2844

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Coverage Regressions

Jobs

Source Files on build 2844

bigdatagenomics / adam / 2844

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Coverage Regressions

Jobs

Source Files on build 2844

README BADGES
x