bigdatagenomics / adam / 2252
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 6
Files 138
Run time 3min
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2252

Pull #1613

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/3f2050816edc17afe4ae5547dc7165b042cbacc4">3f2050816<a href="https://github.com/bigdatagenomics/adam/commit/3f2050816edc17afe4ae5547dc7165b042cbacc4">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/1bedfe9b36fedb7de9ff2872c00a11980f69385e">1bedfe9b3</a>">1bedfe9b3</a><a href="https://github.com/bigdatagenomics/adam/commit/3f2050816edc17afe4ae5547dc7165b042cbacc4"> into 76525367a">76525367a</a>
Pull Request #1613: [ADAM-1611] Extend pipe APIs to Java, Python, and R.

73 of 73 new or added lines in 3 files covered. (100.0%)

6158 of 7342 relevant lines covered (83.87%)

5.01 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
50.0
 -50.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/SAMInFormatter.scala
5
71.34
 -0.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
57
0.0
 adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
65.63
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
90.29
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
93.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
97.18
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
88.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
81.63
 -0.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
96.63
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
60.49
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
82.75
 -0.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
4
70.37
 -7.41% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
5
64.94
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
6
94.07
 -0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2252.1 138
83.5
2 2252.2 138
83.5
3 2252.3 138
83.49
4 2252.4 138
83.61
5 2252.5 138
83.61
6 2252.6 138
83.49
Source Files on build 2252
Coverage ∆ File Lines Relevant Covered Missed Hits/Line