bigdatagenomics / adam / 2249
85%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 137
Run time 2min
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Pull #1545

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/ea324823f899244e7059183e9535b9551c280b84">ea324823f<a href="https://github.com/bigdatagenomics/adam/commit/ea324823f899244e7059183e9535b9551c280b84">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/bigdatagenomics/adam/commit/ea324823f899244e7059183e9535b9551c280b84&quot;&gt;ea324823f&lt;/a&gt;&lt;a href=&quot;https://github.com/bigdatagenomics/adam/commit/ea324823f899244e7059183e9535b9551c280b84&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/ea324823f899244e7059183e9535b955&lt;/a&gt;1c280b84">&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/2a0b2afcc27b75bf81688400510f207615f25bdb">2a0b2afcc</a><a href="https://github.com/bigdatagenomics/adam/commit/ea324823f899244e7059183e9535b9551c280b84">&amp;quot;&amp;gt;2a0b2afcc&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;2a0b2afcc&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/ea324823f899244e7059183e9535b9551c280&lt;/a&gt;b84&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/71d3ee36d">71d3ee36d">71d3ee36d</a>
Pull Request #1545: [ADAM-1257] Add program record support for alignment/fragment files.

223 of 223 new or added lines in 7 files covered. (100.0%)

6157 of 7263 relevant lines covered (84.77%)

6.74 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
63.68
 2.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
71.66
 0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
4
88.89
 -2.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
4
82.46
 -0.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
63.68
 2.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
65.63
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.63
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
92.23
 1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
93.33
 13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
82.05
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
66.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
85.32
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
82.46
 -0.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
5
93.61
 0.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2249.1 137
84.16
2 2249.2 137
84.16
3 2249.3 137
84.15
4 2249.4 137
84.15
5 2249.5 137
84.35
6 2249.6 137
84.36
7 2249.7 137
84.36
8 2249.8 137
84.35
Source Files on build 2249
Coverage ∆ File Lines Relevant Covered Missed Hits/Line