bigdatagenomics / adam / 2245
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 1min
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Pull #1609

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/52637b4e0d4cb6759abbf5f40da8aa78cf60a34a">52637b4e0<a href="https://github.com/bigdatagenomics/adam/commit/52637b4e0d4cb6759abbf5f40da8aa78cf60a34a">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/89a89843f266db1a58e2a0042c53a2b41ea55555">89a89843f</a>">89a89843f</a><a href="https://github.com/bigdatagenomics/adam/commit/52637b4e0d4cb6759abbf5f40da8aa78cf60a34a"> into 961f90ade">961f90ade</a>
Pull Request #1609: [ADAM-1457] Add support for loading BGZF compressed FASTQ in parallel.

18 of 18 new or added lines in 1 file covered. (100.0%)

6000 of 7107 relevant lines covered (84.42%)

6.73 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
65.63
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
67.31
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
71.1
 -0.32% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
60.91
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
91.67
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
67.53
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
85.32
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
82.19
 -0.63% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
90.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
94.37
 -4.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
4
81.63
 -0.42% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
4
94.38
 -3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
5
93.19
 0.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2245.1 138
84.06
2 2245.2 138
84.04
3 2245.3 138
84.04
4 2245.4 138
84.06
5 2245.5 138
84.1
6 2245.6 138
84.09
7 2245.7 138
84.1
8 2245.8 138
84.09
Source Files on build 2245
Coverage ∆ File Lines Relevant Covered Missed Hits/Line