bigdatagenomics / adam / 2243
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 2min
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2243

Pull #1609

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/33cd1e69786d5812d6de671265a3b8d1b2a2fd8b">33cd1e697<a href="https://github.com/bigdatagenomics/adam/commit/33cd1e69786d5812d6de671265a3b8d1b2a2fd8b">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/cefab0105d1948c9724ed0eb88617dc6e8de0657">cefab0105</a>">cefab0105</a><a href="https://github.com/bigdatagenomics/adam/commit/33cd1e69786d5812d6de671265a3b8d1b2a2fd8b"> into 961f90ade">961f90ade</a>
Pull Request #1609: [ADAM-1457] Add support for loading BGZF compressed FASTQ in parallel.

20 of 20 new or added lines in 1 file covered. (100.0%)

6012 of 7107 relevant lines covered (84.59%)

6.73 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.26
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
62.96
 1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
82.5
 -0.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
86.24
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
91.67
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
95.77
 -2.82% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
60.91
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
95.51
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
81.77
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
74.07
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
7
92.96
 0.16% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2243.1 138
84.1
2 2243.2 138
84.1
3 2243.3 138
84.08
4 2243.4 138
84.08
5 2243.5 138
84.06
6 2243.6 138
84.04
7 2243.7 138
84.06
8 2243.8 138
84.04
Source Files on build 2243
Coverage ∆ File Lines Relevant Covered Missed Hits/Line