bigdatagenomics / adam / 2234
85%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 137
Run time 1min
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2234

Pull #1545

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/08838555211e1d73471cbbc16ed55df7ef3e4fb3">088385552<a href="https://github.com/bigdatagenomics/adam/commit/08838555211e1d73471cbbc16ed55df7ef3e4fb3">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/25985d807a95bdf01a6ebcf08df837705409e8ee">25985d807</a>">25985d807</a><a href="https://github.com/bigdatagenomics/adam/commit/08838555211e1d73471cbbc16ed55df7ef3e4fb3"> into 961f90ade">961f90ade</a>
Pull Request #1545: [ADAM-1257] Add program record support for alignment/fragment files.

223 of 223 new or added lines in 7 files covered. (100.0%)

6157 of 7263 relevant lines covered (84.77%)

6.74 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
63.68
 2.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
71.66
 0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
4
88.89
 -2.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
4
82.46
 -0.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
63.68
 2.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
65.63
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.63
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
92.23
 1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
93.33
 13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
82.05
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
66.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
85.32
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
82.46
 -0.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
5
93.61
 0.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2234.1 137
84.16
2 2234.2 137
84.16
3 2234.3 137
84.15
4 2234.4 137
84.15
5 2234.5 137
84.35
6 2234.6 137
84.36
7 2234.7 137
84.36
8 2234.8 137
84.35
Source Files on build 2234
Coverage ∆ File Lines Relevant Covered Missed Hits/Line