bigdatagenomics / adam / 2225
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 1min
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2225

Pull #1606

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/4692ec738d7ed2a4d64b0903534d6923daad48de">4692ec738<a href="https://github.com/bigdatagenomics/adam/commit/4692ec738d7ed2a4d64b0903534d6923daad48de">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/9e099c3f1b9790f06669d46d6bf39360c1fbfba9">9e099c3f1</a>">9e099c3f1</a><a href="https://github.com/bigdatagenomics/adam/commit/4692ec738d7ed2a4d64b0903534d6923daad48de"> into 607cd50be">607cd50be</a>
Pull Request #1606: [ADAM-1504] Fix transient sorting bug when sorting reads in index mode.

3 of 3 new or added lines in 1 file covered. (100.0%)

5801 of 6902 relevant lines covered (84.05%)

6.69 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
75.93
 3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
65.63
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
81.91
 -0.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.63
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
95.77
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
66.23
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
82.81
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
91.67
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
3
73.33
 -20.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
4
90.83
 0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2225.1 138
83.6
2 2225.2 138
83.58
3 2225.3 138
83.6
4 2225.4 138
83.58
5 2225.5 138
83.66
6 2225.6 138
83.64
7 2225.7 138
83.64
8 2225.8 138
83.66
Source Files on build 2225
Coverage ∆ File Lines Relevant Covered Missed Hits/Line