bigdatagenomics / adam / 2223
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 1min
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2223

Pull #1608

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/d19bc34943776f021dc0cab6067438153b8f1d2b">d19bc3494<a href="https://github.com/bigdatagenomics/adam/commit/d19bc34943776f021dc0cab6067438153b8f1d2b">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/55d1af75e3296af6fb961a50495ae77be6817853">55d1af75e</a>">55d1af75e</a><a href="https://github.com/bigdatagenomics/adam/commit/d19bc34943776f021dc0cab6067438153b8f1d2b"> into 607cd50be">607cd50be</a>
Pull Request #1608: [ADAM-1554] Support saving BGZF VCF output.

30 of 30 new or added lines in 7 files covered. (100.0%)

5813 of 6911 relevant lines covered (84.11%)

6.7 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
75.93
 3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
65.63
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
82.33
 0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
97.75
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
89.81
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
91.3
 0.71% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
1
86.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
60.91
 -1.02% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
93.02
 -3.49% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
3
60.49
 -2.47% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
4
62.34
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2223.1 138
83.6
2 2223.2 138
83.62
3 2223.3 138
83.62
4 2223.4 138
83.6
5 2223.5 138
83.84
6 2223.6 138
83.85
7 2223.7 138
83.85
8 2223.8 138
83.84
Source Files on build 2223
Coverage ∆ File Lines Relevant Covered Missed Hits/Line