bigdatagenomics / adam / 2222
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 1min
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2222

Pull #1608

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/7a728eeb43c6b7e6f827d7ded3b0040578a90be9">7a728eeb4<a href="https://github.com/bigdatagenomics/adam/commit/7a728eeb43c6b7e6f827d7ded3b0040578a90be9">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/5cce59e4682730ec431a67a90aae632482d6fd22">5cce59e46</a>">5cce59e46</a><a href="https://github.com/bigdatagenomics/adam/commit/7a728eeb43c6b7e6f827d7ded3b0040578a90be9"> into 607cd50be">607cd50be</a>
Pull Request #1608: [ADAM-1554] Support saving BGZF VCF output.

26 of 26 new or added lines in 7 files covered. (100.0%)

5808 of 6908 relevant lines covered (84.08%)

6.68 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
84.62
 -6.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
61.42
 -0.51% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
75.93
 3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
96.63
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
92.23
 2.91% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
70.87
 -0.32% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
87.5
 -12.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/VCFHeaderUtils.scala
1
86.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
81.91
 -0.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
82.33
 -0.63% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
66.23
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
84.62
 -6.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
37
90.6
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2222.1 138
83.48
2 2222.2 138
83.5
3 2222.3 138
83.48
4 2222.4 138
83.5
5 2222.5 138
83.47
6 2222.6 138
83.47
7 2222.7 138
83.48
8 2222.8 138
83.48
Source Files on build 2222
Coverage ∆ File Lines Relevant Covered Missed Hits/Line