bigdatagenomics / adam / 2214
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 1
Files 138
Run time 6s
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2214

Pull #1600

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/a7a15e3a519b94321096e4eb6411987849dde8f5">a7a15e3a5<a href="https://github.com/bigdatagenomics/adam/commit/a7a15e3a519b94321096e4eb6411987849dde8f5">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b251fbb07e3fcad78eaead8d578335bc714dc966">b251fbb07</a>">b251fbb07</a><a href="https://github.com/bigdatagenomics/adam/commit/a7a15e3a519b94321096e4eb6411987849dde8f5"> into 238e0445c">238e0445c</a>
Pull Request #1600: [ADAM-1599] Add explicit functions for updating GenomicRDD metadata.

71 of 71 new or added lines in 8 files covered. (100.0%)

5769 of 6898 relevant lines covered (83.63%)

0.84 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
92.31
 4.07% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
1
90.91
 -0.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
3
71.2
 -1.21% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
60.41
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
89.17
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
93.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
71.2
 -1.21% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
90.91
 -0.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
44.44
 -11.11% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichVariant.scala
1
98.87
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
59.26
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
63.46
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
84.4
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
81.63
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
5
68.52
 -9.26% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
5
63.64
 -5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
6
87.38
 -4.85% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
8
89.68
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2214.1 138
83.63
Source Files on build 2214
Coverage ∆ File Lines Relevant Covered Missed Hits/Line