bigdatagenomics / adam / 2209
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 1min
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2209

Pull #1600

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/d1b3d82a27f827f49c643d57d681425743ce504a">d1b3d82a2<a href="https://github.com/bigdatagenomics/adam/commit/d1b3d82a27f827f49c643d57d681425743ce504a">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/9812642df8f726cc41061487c3a73a84db99a8e4">9812642df</a>">9812642df</a><a href="https://github.com/bigdatagenomics/adam/commit/d1b3d82a27f827f49c643d57d681425743ce504a"> into 238e0445c">238e0445c</a>
Pull Request #1600: [ADAM-1599] Add explicit functions for updating GenomicRDD metadata.

86 of 86 new or added lines in 8 files covered. (100.0%)

5812 of 6899 relevant lines covered (84.24%)

6.69 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
90.7
 2.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
1
89.39
 -2.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
91.49
 1.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
2
72.87
 0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
61.42
 1.02% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.83
 4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
61.73
 1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
93.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
85.32
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
82.65
 0.66% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
74.07
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
89.39
 -2.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
3
90.83
 -0.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
91.49
 1.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
3
90.7
 2.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
5
72.87
 0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
5
64.94
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2209.1 138
83.66
2 2209.2 138
83.68
3 2209.3 138
83.66
4 2209.4 138
83.68
5 2209.5 138
83.64
6 2209.6 138
83.62
7 2209.7 138
83.64
8 2209.8 138
83.62
Source Files on build 2209
Coverage ∆ File Lines Relevant Covered Missed Hits/Line