bigdatagenomics / adam / 2208
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 3min
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2208

Pull #1600

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/514b644f2c504c735dd6a50a7da65dbc62ed1ae2">514b644f2<a href="https://github.com/bigdatagenomics/adam/commit/514b644f2c504c735dd6a50a7da65dbc62ed1ae2">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/15e40b2ec47d92cbf79e18b20f506e2157f2bcf1">15e40b2ec</a>">15e40b2ec</a><a href="https://github.com/bigdatagenomics/adam/commit/514b644f2c504c735dd6a50a7da65dbc62ed1ae2"> into 238e0445c">238e0445c</a>
Pull Request #1600: [ADAM-1599] Add explicit functions for updating GenomicRDD metadata.

86 of 86 new or added lines in 8 files covered. (100.0%)

5812 of 6899 relevant lines covered (84.24%)

6.69 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
90.7
 2.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
1
89.39
 -2.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
91.49
 1.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
2
72.87
 0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
61.42
 1.02% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.83
 4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
61.73
 1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
93.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
85.32
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
82.65
 0.66% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
74.07
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
89.39
 -2.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
3
90.83
 -0.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
91.49
 1.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
3
90.7
 2.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
5
72.87
 0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
5
64.94
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2208.1 138
83.68
2 2208.2 138
83.66
3 2208.3 138
83.68
4 2208.4 138
83.64
5 2208.5 138
83.64
6 2208.6 138
83.62
7 2208.7 138
83.66
8 2208.8 138
83.62
Source Files on build 2208
Coverage ∆ File Lines Relevant Covered Missed Hits/Line