bigdatagenomics / adam / 2204
84%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 154
Run time 1min
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Pull #1528

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/358225c5a25085f4b06cc1caf7af66921319e192">358225c5a<a href="https://github.com/bigdatagenomics/adam/commit/358225c5a25085f4b06cc1caf7af66921319e192">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b88524803ee01e6c14adee9fbf1c327d82efc86d">b88524803</a>">b88524803</a><a href="https://github.com/bigdatagenomics/adam/commit/358225c5a25085f4b06cc1caf7af66921319e192"> into 467db1ff9">467db1ff9</a>
Pull Request #1528: [ADAM-1501] Compute coverage using Dataset API.

31 of 31 new or added lines in 2 files covered. (100.0%)

5731 of 6850 relevant lines covered (83.66%)

6.69 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
81.99
 1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
98.87
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
75.93
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
65.63
 -1.04% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.17
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
81.99
 1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
81.63
 -0.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
96.63
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
90.29
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
61.73
 -2.47% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
65.38
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
64.94
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
90.74
 -2.78% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
4
59.9
 -1.02% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
6
72.08
 -1.95% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
9
89.45
 -1.61% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2204.1 154
83.66
2 2204.2 154
83.65
3 2204.3 154
83.65
4 2204.4 154
83.65
5 2204.5 154
83.65
6 2204.6 154
83.66
7 2204.7 154
83.66
8 2204.8 154
83.66
Source Files on build 2204
Coverage ∆ File Lines Relevant Covered Missed Hits/Line