bigdatagenomics / adam / 2203
85%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 138
Run time 1min
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Pull #1598

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/6b5f30589ede34f153dbac174c5b234aff21bb64">6b5f30589<a href="https://github.com/bigdatagenomics/adam/commit/6b5f30589ede34f153dbac174c5b234aff21bb64">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/2b72fff25f5ac9db960845162f7b74ca1f20d6ca">2b72fff25</a>">2b72fff25</a><a href="https://github.com/bigdatagenomics/adam/commit/6b5f30589ede34f153dbac174c5b234aff21bb64"> into 324ae74d3">324ae74d3</a>
Pull Request #1598: [ADAM-1576] Allow translation between two different GenomicRDD types.

194 of 194 new or added lines in 2 files covered. (100.0%)

5705 of 6833 relevant lines covered (83.49%)

6.68 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
73.86
 -0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
15
89.27
 -1.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
63.64
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.81
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
86.67
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
80.89
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
98.87
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
2
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
61.73
 -2.47% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
87.38
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
3
70.37
 -5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
90.74
 -2.78% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
3
63.64
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
59.39
 -1.52% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
93.26
 -4.49% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
4
83.49
 -2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
8
73.86
 -0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
32
89.27
 -1.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2203.1 138
83.49
2 2203.2 138
83.48
3 2203.3 138
83.48
3 2203.3 138
83.48
4 2203.4 138
83.49
5 2203.5 138
83.49
6 2203.6 138
83.48
7 2203.7 138
83.49
Source Files on build 2203
Coverage ∆ File Lines Relevant Covered Missed Hits/Line