bigdatagenomics / adam / 2810

DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 2min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2810

push

jenkins

heuermh 
Add Dataset based k-mer counter.

6 of 6 new or added lines in 1 file covered. (100.0%)

5654 of 6737 relevant lines covered (83.92%)

6.67 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
90.16
 -1.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
99.24
 0.06% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
89.81
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
97.3
 4.99% adam-core/src/main/scala/org/bdgenomics/adam/models/Coverage.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
82.54
 -3.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
82.05
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
90.29
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
60.41
 -1.02% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
64.94
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
89.19
 -1.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
87.5
 -2.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
4
72.22
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
89.47
 1.01% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
11
84.21
 -1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
19
88.69
 -1.04% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
23
71.76
 -1.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
38
90.8
 1.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
53
81.1
 -4.28% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
77
73.06
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2810.1 266
83.38
2 2810.2 266
83.36
3 2810.3 266
83.46
4 2810.4 266
83.36
5 2810.5 266
83.38
6 2810.6 266
83.45
7 2810.7 266
83.45
8 2810.8 266
83.46
Source Files on build 2810
Coverage ∆ File Lines Relevant Covered Missed Hits/Line