487
81%

Ran 10 Jul 2017 10:37PM UTC

Jobs 1

Files 21

Run time 1s

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Build # 487

Build Type

push

travis-ci

Committed by

iskandr

Commit Message

Add non-coding RNA sequences to pyensembl (#185)

* Include ncRNA file

* Properly detect if transcript is ncRNA

* Update tests

* Now accepts arbitrary number of transcript fasta files

* Clarified command line interface

* Combines transcript sequences into one dictionary

* Bug parsing fasta dictionary

Would cumulatively add all transcripts from all FASTA files to pickle
dump

* Handle multiple protein fasta files

* style formatting

Run Details

74 of 74 new or added lines in 5 files covered. (100.0%)

1286 of 1580 relevant lines covered (81.39%)

0.81 hits per line

New Missed Lines in Diff

Lines	Coverage	File
1	100.0	pyensembl/transcript.py
2	100.0	pyensembl/genome.py
8	100.0	pyensembl/sequence_data.py

Uncovered Existing Lines

Lines	Coverage	File
1	100.0	pyensembl/fasta.py
2	100.0	pyensembl/shell.py
2	100.0	pyensembl/sequence_data.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	487.1	10 Jul 2017 10:37PM UTC	0	81.39	Travis Job 487.1

Source Files on build 487

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hammerlab / pyensembl / 487
81%

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hammerlab / pyensembl / 487 81%

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New Missed Lines in Diff

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Source Files on build 487

hammerlab / pyensembl / 487
81%

README BADGES
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