bigdatagenomics / adam / 2801

DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2801

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jenkins

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5419 of 6508 relevant lines covered (83.27%)

6.62 hits per line

Coverage Regressions

Lines Coverage ∆ File
88
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
79
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
67
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
59
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 adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
38
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
30
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 adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
28
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 adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
23
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 adam-cli/src/main/scala/org/bdgenomics/adam/cli/PrintADAM.scala
20
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 adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
19
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala
19
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
18
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAMMain.scala
18
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
17
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 adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
16
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
15
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 adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
15
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
14
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 adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
14
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
14
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
11
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 adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
11
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 adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
10
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 adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
10
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
10
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SnpTable.scala
10
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 adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
8
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
7
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
6
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/VariantContext.scala
5
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
5
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MarkDuplicates.scala
5
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
5
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
5
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
4
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
4
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 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
2
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFragments.scala
2
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/Fasta2ADAM.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
Jobs
ID Job ID Ran Files Coverage
1 2801.1 0
82.74
2 2801.2 0
82.73
3 2801.3 0
82.74
4 2801.4 0
82.74
5 2801.5 0
82.74
6 2801.6 0
82.76
7 2801.7 0
82.73
8 2801.8 0
82.76
Source Files on build 2801
Detailed source file information is not available for this build.