bigdatagenomics / adam / 2801

DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2801

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jenkins

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5419 of 6508 relevant lines covered (83.27%)

6.62 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
98.28
 -1.72% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
87.5
 -12.5% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
2
95.56
 -4.44% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFragments.scala
2
88.89
 -11.11% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Fasta2ADAM.scala
2
91.67
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
90.0
 -10.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
90.48
 -9.52% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
2
99.18
 -0.82% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
3
88.46
 -11.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
4
77.78
 -22.22% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
4
86.21
 -13.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
5
86.84
 -13.16% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
5
89.58
 -10.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MarkDuplicates.scala
5
86.84
 -13.16% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
5
64.29
 -35.71% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
5
91.53
 -8.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
6
71.43
 -28.57% adam-core/src/main/scala/org/bdgenomics/adam/models/VariantContext.scala
7
93.2
 -6.8% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
8
85.45
 -14.55% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
10
69.7
 -30.3% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
10
84.13
 -15.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
10
83.05
 -16.95% adam-core/src/main/scala/org/bdgenomics/adam/models/SnpTable.scala
10
69.7
 -30.3% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
11
94.27
 -5.73% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
11
89.32
 -10.68% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
14
74.07
 -25.93% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
14
62.16
 -37.84% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
14
90.34
 -9.66% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
15
11.76
 -88.24% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
15
89.73
 -10.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
16
85.32
 -14.68% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
17
67.31
 -32.69% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
18
60.0
 -40.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAMMain.scala
18
53.85
 -46.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
19
54.76
 -45.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala
19
73.24
 -26.76% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
20
9.09
 -90.91% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
23
8.0
 -92.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/PrintADAM.scala
28
6.67
 -93.33% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
30
62.96
 -37.04% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
38
84.98
 -15.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
59
3.28
 -96.72% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
67
83.46
 -16.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
79
56.83
 -43.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
88
69.66
 -30.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2801.1 250
82.74
2 2801.2 250
82.73
3 2801.3 250
82.74
4 2801.4 250
82.74
5 2801.5 250
82.74
6 2801.6 250
82.76
7 2801.7 250
82.73
8 2801.8 250
82.76
Source Files on build 2801
Coverage ∆ File Lines Relevant Covered Missed Hits/Line