bigdatagenomics / adam / 2177
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2177

Pull #1391

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/976bea3ca8a6d3f3b14e1e197cb28505244b327a">976bea3ca<a href="https://github.com/bigdatagenomics/adam/commit/976bea3ca8a6d3f3b14e1e197cb28505244b327a">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/54b6ab34c764e2faeee9ecfe3a1194ab94980d98">54b6ab34c</a>">54b6ab34c</a><a href="https://github.com/bigdatagenomics/adam/commit/976bea3ca8a6d3f3b14e1e197cb28505244b327a"> into 0306717cb">0306717cb</a>
Pull Request #1391: [ADAM-1018] Add support for Spark SQL Datasets.

255 of 255 new or added lines in 12 files covered. (100.0%)

5561 of 6713 relevant lines covered (82.84%)

6.6 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
89.47
 1.01% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
87.5
 -2.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
89.19
 -1.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
69.46
 -0.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
4
72.94
 -0.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
4
84.21
 -1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
4
83.73
 -5.99% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
11
82.86
 -0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
21
81.44
 -3.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.23
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
95.83
 4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.66
 -0.69% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
61.73
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
95.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
2
81.63
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
56.28
 -0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
70.37
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
73.33
 -20.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
4
66.23
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
5
82.57
 -2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
11
69.46
 -0.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
15
83.73
 -5.99% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
36
82.86
 -0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2177.1 266
82.51
2 2177.2 266
82.51
3 2177.3 266
82.5
4 2177.4 266
82.42
5 2177.5 266
82.41
6 2177.6 266
82.5
7 2177.7 266
82.41
8 2177.8 266
82.42
Source Files on build 2177
Coverage ∆ File Lines Relevant Covered Missed Hits/Line