bigdatagenomics / adam / 2176
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2176

Pull #1590

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/f76a988e38b8e4ca606793dee61d78f2b99f32c3">f76a988e3<a href="https://github.com/bigdatagenomics/adam/commit/f76a988e38b8e4ca606793dee61d78f2b99f32c3">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/f03ba954727394d15a42a261d3b281c64b5ed614">f03ba9547</a>">f03ba9547</a><a href="https://github.com/bigdatagenomics/adam/commit/f76a988e38b8e4ca606793dee61d78f2b99f32c3"> into 8572fb7e8">8572fb7e8</a>
Pull Request #1590: Add SortedGenomicRDD trait, refactor shuffle joins and pipe

657 of 657 new or added lines in 13 files covered. (100.0%)

5675 of 6912 relevant lines covered (82.1%)

7.11 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
98.86
 -0.32% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
4
86.11
 -3.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
5
88.61
 -2.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
10
77.08
 -11.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
11
85.71
 -4.01% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
13
74.55
 -15.93% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
15
62.92
 -10.32% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
15
76.77
 -8.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
20
86.85
 3.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
31
69.54
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
32
78.0
 -6.98% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
48
59.32
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRangePartitioner.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
96.55
 -1.72% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
69.54
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
86.24
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
67.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
95.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
2
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
78.0
 -6.98% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
64.94
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
86.67
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
81.63
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
94.38
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
60.49
 -2.47% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
3
72.22
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
55.19
 -1.64% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
89.32
 -3.88% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
9
86.85
 3.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
11
31.25
 -68.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomeBins.scala
Jobs
ID Job ID Ran Files Coverage
1 2176.1 276
82.09
2 2176.2 447
80.93
3 2176.3 276
82.09
4 2176.4 276
82.1
5 2176.5 276
82.1
6 2176.6 276
82.1
7 2176.7 276
82.09
8 2176.8 276
82.09
Source Files on build 2176
Coverage ∆ File Lines Relevant Covered Missed Hits/Line