bigdatagenomics / adam / 2172
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 56s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2172

Pull #1586

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/29577f56f0f927ac772d6e57b188294c105e3e34">29577f56f<a href="https://github.com/bigdatagenomics/adam/commit/29577f56f0f927ac772d6e57b188294c105e3e34">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/1488bdc1595c4f5bfb2c8985d2bdacade2ff337e">1488bdc15</a>">1488bdc15</a><a href="https://github.com/bigdatagenomics/adam/commit/29577f56f0f927ac772d6e57b188294c105e3e34"> into 0306717cb">0306717cb</a>
Pull Request #1586: [ADAM-1585] Support additional Illumina FASTQ metadata.

4 of 4 new or added lines in 1 file covered. (100.0%)

5409 of 6509 relevant lines covered (83.1%)

6.61 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
67.53
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
84.4
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
84.98
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
89.83
 -1.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
1
56.83
 1.64% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
75.93
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
90.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.66
 -0.69% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
93.33
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
81.77
 -0.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
4
83.95
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2172.1 250
82.64
2 2172.2 250
82.65
3 2172.3 250
82.64
4 2172.4 250
82.49
5 2172.5 250
82.65
6 2172.6 250
82.49
7 2172.7 250
82.5
8 2172.8 250
82.5
Source Files on build 2172
Coverage ∆ File Lines Relevant Covered Missed Hits/Line