bigdatagenomics / adam / 2171
81%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 155
Run time 1min
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Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/7eb1518289f55bf5517c0889a3f327f1de4c028f">7eb151828<a href="https://github.com/bigdatagenomics/adam/commit/7eb1518289f55bf5517c0889a3f327f1de4c028f">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/4b65619834e9bf4284a7444f077d6b5521374cb3">4b6561983</a>">4b6561983</a><a href="https://github.com/bigdatagenomics/adam/commit/7eb1518289f55bf5517c0889a3f327f1de4c028f"> into 0306717cb">0306717cb</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

222 of 222 new or added lines in 14 files covered. (100.0%)

5509 of 6655 relevant lines covered (82.78%)

6.59 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
9
84.75
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
10
82.96
 1.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
11
72.5
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
65.38
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
89.83
 -1.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
60.49
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
54.1
 -0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
2
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
91.67
 -1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
84.4
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
85.45
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
2
89.47
 -3.86% adam-core/src/main/scala/org/bdgenomics/adam/util/PhredUtils.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
58.33
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
3
66.23
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
5
91.26
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
5
84.03
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
11
89.73
 -0.62% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
27
85.38
 0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
58
82.96
 1.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
81
70.57
 1.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
120
81.63
 -3.39% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
Jobs
ID Job ID Ran Files Coverage
1 2171.1 259
82.43
2 2171.2 259
82.43
3 2171.3 259
82.45
4 2171.4 259
82.45
5 2171.5 259
82.34
6 2171.6 259
82.34
7 2171.7 259
82.36
8 2171.8 259
82.36
Source Files on build 2171
Coverage ∆ File Lines Relevant Covered Missed Hits/Line