bigdatagenomics / adam / 2765

DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 55s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2765

push

jenkins

heuermh 
[ADAM-1570] Upgrade to bdg-formats 0.11.1.

Resolves #1570.

7 of 7 new or added lines in 1 file covered. (100.0%)

5403 of 6506 relevant lines covered (83.05%)

6.61 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
81.91
 -2.1% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
84.4
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
94.19
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
89.47
 -3.86% adam-core/src/main/scala/org/bdgenomics/adam/util/PhredUtils.scala
2
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
67.53
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
55.19
 -0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
95.38
 -4.62% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
3
95.51
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
90.29
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
84.2
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
104
81.91
 -2.1% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
Jobs
ID Job ID Ran Files Coverage
1 2765.1 250
82.59
2 2765.2 250
82.59
3 2765.3 250
82.6
4 2765.4 250
82.6
5 2765.5 250
82.59
6 2765.6 250
82.59
7 2765.7 250
82.6
8 2765.8 250
82.6
Source Files on build 2765
Coverage ∆ File Lines Relevant Covered Missed Hits/Line