bigdatagenomics / adam / 2112
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 7
Files 152
Run time 50s
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2112

Pull #1559

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/3b5c9a71c4747fd6dac18b826c3c96e7ec40ed89">3b5c9a71c<a href="https://github.com/bigdatagenomics/adam/commit/3b5c9a71c4747fd6dac18b826c3c96e7ec40ed89">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/8cf09f6ce070407e97be634d8b21958218ca0187">8cf09f6ce</a>">8cf09f6ce</a><a href="https://github.com/bigdatagenomics/adam/commit/3b5c9a71c4747fd6dac18b826c3c96e7ec40ed89"> into 310d9f97c">310d9f97c</a>
Pull Request #1559: [ADAM-1551] Emit non-reference model genotype at called sites.

46 of 46 new or added lines in 2 files covered. (100.0%)

5403 of 6506 relevant lines covered (83.05%)

5.78 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
18
81.91
 -2.1% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.4
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
89.47
 -3.86% adam-core/src/main/scala/org/bdgenomics/adam/util/PhredUtils.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
67.53
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
94.19
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
55.19
 -0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
95.38
 -4.62% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
3
81.91
 -2.1% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
95.51
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
90.29
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
84.2
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2112.1 250
82.59
2 2112.2 250
82.59
3 2112.3 250
82.6
4 2112.4 250
82.6
5 2112.5 250
82.59
6 2112.6 250
82.59
7 2112.7 250
82.6
Source Files on build 2112
Coverage ∆ File Lines Relevant Covered Missed Hits/Line