biocore / gneiss / 644

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travis-ci

Updating heatmaps in notebook (#201)

* DOC: Fixing linear mixed effects summary plots.
Also separating out qiime2 tutorials

* ENH: Adding in multiple hypothesis correction

* forgot import

* TST: Fixing file creation issues

* pep8

* FIX: Fixing orientation of pvalues for lme

* Updating qiime2 tutorials for 88 soils and cf

* TST: Fixing summary test

* Adding in all of the updated IPython notebooks

* Updating bokeh tests

* pep8

* DOC: Adding much more documentation

* Updating docs for principal balances

* DOC: Fixing references

* Updating taxonomies to meet qiime2 format

* DOC: Addressing #199.

* DOC: Updating notebooks to reflect on changes in heatmap orientation

* DOC: Removing warning

* ENH: Changing types over to Hierarchy instead of Phylogeny[Rooted]

* FIX: fixing typos in assign-ids
Fixing types in regression

* FIX: Fixing types with plotting and clustering functions

* Updating notebooks

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1178 of 1217 relevant lines covered (96.8%)

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