bigdatagenomics / adam / 2747

DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2747

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jenkins

fnothaft 
[ADAM-1564] Read VCF header from stream in VCFOutFormatter. (#1565)

Read VCF header from stream in VCFOutFormatter. Resolves #1564.

40 of 40 new or added lines in 3 files covered. (100.0%)

5399 of 6478 relevant lines covered (83.34%)

6.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
15
83.87
 -1.78% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
56.83
 1.09% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
77.78
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.35
 1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.66
 -0.69% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
84.69
 2.73% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
84.98
 0.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
2
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
86.67
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
66.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
83.87
 -1.78% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
5
81.65
 -2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
Jobs
ID Job ID Ran Files Coverage
1 2747.1 251
82.76
2 2747.2 251
82.87
3 2747.3 251
82.8
4 2747.4 251
82.82
5 2747.5 251
82.76
6 2747.6 251
82.82
7 2747.7 251
82.8
8 2747.8 251
82.77
Source Files on build 2747
Coverage ∆ File Lines Relevant Covered Missed Hits/Line