bigdatagenomics / adam / 2095
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 154
Run time 1min
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2095

Pull #1561

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/cc0b142dc29aa8a8e1a01fdf622aa0d129e9e1bb">cc0b142dc<a href="https://github.com/bigdatagenomics/adam/commit/cc0b142dc29aa8a8e1a01fdf622aa0d129e9e1bb">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/bigdatagenomics/adam/commit/cc0b142dc29aa8a8e1a01fdf622aa0d129e9e1bb&quot;&gt;cc0b142dc&lt;/a&gt;&lt;a href=&quot;https://github.com/bigdatagenomics/adam/commit/cc0b142dc29aa8a8e1a01fdf622aa0d129e9e1bb&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/cc0b142dc29aa8a8e1a01fdf622aa0d1&lt;/a&gt;29e9e1bb">&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/a4d196e975042abecf9d82562107b97609ee677b">a4d196e97</a><a href="https://github.com/bigdatagenomics/adam/commit/cc0b142dc29aa8a8e1a01fdf622aa0d129e9e1bb">&amp;quot;&amp;gt;a4d196e97&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;a4d196e97&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/cc0b142dc29aa8a8e1a01fdf622aa0d129e9e&lt;/a&gt;1bb&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/ad5ae6df6">ad5ae6df6">ad5ae6df6</a>
Pull Request #1561: [ADAM-1533] Set Theory

40 of 40 new or added lines in 10 files covered. (100.0%)

5436 of 6536 relevant lines covered (83.17%)

6.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
81.74
 0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
65.89
 -3.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
85.32
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
89.83
 -1.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
2
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
90.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
67.53
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
81.74
 0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
10
89.73
 -0.62% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
30
84.98
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
69
65.89
 -3.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2095.1 254
82.79
2 2095.2 254
82.6
3 2095.3 254
82.77
4 2095.4 254
82.77
5 2095.5 254
82.79
6 2095.6 254
82.6
7 2095.7 254
82.59
8 2095.8 254
82.59
Source Files on build 2095
Coverage ∆ File Lines Relevant Covered Missed Hits/Line