bigdatagenomics / adam / 2090
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 154
Run time 39s
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2090

Pull #1561

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/1daa69788cb362d5664b22a495ca180ca1b99871">1daa69788<a href="https://github.com/bigdatagenomics/adam/commit/1daa69788cb362d5664b22a495ca180ca1b99871">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/bigdatagenomics/adam/commit/1daa69788cb362d5664b22a495ca180ca1b99871&quot;&gt;1daa69788&lt;/a&gt;&lt;a href=&quot;https://github.com/bigdatagenomics/adam/commit/1daa69788cb362d5664b22a495ca180ca1b99871&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/1daa69788cb362d5664b22a495ca180c&lt;/a&gt;a1b99871">&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/966be935007fca4291a00ca89dd74e46b5fad3e5">966be9350</a><a href="https://github.com/bigdatagenomics/adam/commit/1daa69788cb362d5664b22a495ca180ca1b99871">&amp;quot;&amp;gt;966be9350&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;966be9350&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/1daa69788cb362d5664b22a495ca180ca1b99&lt;/a&gt;871&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/ad5ae6df6">ad5ae6df6">ad5ae6df6</a>
Pull Request #1561: Issue#1533set theory

41 of 41 new or added lines in 10 files covered. (100.0%)

5422 of 6545 relevant lines covered (82.84%)

6.6 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
81.28
 -0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
5
69.42
 0.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
98.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
85.02
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
1
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
90.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
96.23
 -3.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
2
88.14
 -3.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
3
81.28
 -0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
63.64
 -5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
83.49
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
10
89.73
 -0.62% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
33
83.79
 -1.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
70
69.42
 0.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2090.1 253
82.37
2 2090.2 253
82.55
3 2090.3 253
82.37
4 2090.4 253
82.55
5 2090.5 253
82.35
6 2090.6 253
82.35
7 2090.7 253
82.57
8 2090.8 253
82.57
Source Files on build 2090
Coverage ∆ File Lines Relevant Covered Missed Hits/Line