bigdatagenomics / adam / 2087
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 48s
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2087

Pull #1559

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/17ee84d982f536b77862232d608963c080695e59">17ee84d98<a href="https://github.com/bigdatagenomics/adam/commit/17ee84d982f536b77862232d608963c080695e59">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/d26a6d52a2cc63ca52f96eb59a728155552bf784">d26a6d52a</a>">d26a6d52a</a><a href="https://github.com/bigdatagenomics/adam/commit/17ee84d982f536b77862232d608963c080695e59"> into ad5ae6df6">ad5ae6df6</a>
Pull Request #1559: [ADAM-1551] Emit non-reference model genotype at called sites.

19 of 19 new or added lines in 1 file covered. (100.0%)

5403 of 6478 relevant lines covered (83.41%)

6.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
4
85.8
 0.79% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
93.33
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/PhredUtils.scala
1
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
90.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
84.4
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
88.14
 -3.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
3
81.96
 0.46% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
66.23
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
80
85.8
 0.79% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
Jobs
ID Job ID Ran Files Coverage
1 2087.1 251
82.74
2 2087.2 251
82.74
3 2087.3 251
82.76
4 2087.4 251
82.76
5 2087.5 251
82.82
6 2087.6 251
82.8
7 2087.7 251
82.8
8 2087.8 251
82.82
Source Files on build 2087
Coverage ∆ File Lines Relevant Covered Missed Hits/Line