bigdatagenomics / adam / 2086
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 155
Run time 1min
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2086

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/7f47bdfb02d226aacf3a925d2f4e5acb85c8101b">7f47bdfb0<a href="https://github.com/bigdatagenomics/adam/commit/7f47bdfb02d226aacf3a925d2f4e5acb85c8101b">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/585c6edcf6e3aad7512ebc0a392ab2a8c9523585">585c6edcf</a>">585c6edcf</a><a href="https://github.com/bigdatagenomics/adam/commit/7f47bdfb02d226aacf3a925d2f4e5acb85c8101b"> into ad5ae6df6">ad5ae6df6</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

230 of 230 new or added lines in 14 files covered. (100.0%)

5531 of 6634 relevant lines covered (83.37%)

6.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
8
86.89
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
10
76.74
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
17
81.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
58.33
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
67.53
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
83.49
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
85.45
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
3
74.07
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
93.2
 2.91% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
5
84.03
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
10
90.41
 0.07% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
27
85.38
 0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
64
81.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
82
70.33
 1.26% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2086.1 260
82.65
2 2086.2 260
82.67
3 2086.3 260
82.65
4 2086.4 260
82.88
5 2086.5 260
82.67
6 2086.6 260
82.89
7 2086.7 260
82.89
8 2086.8 260
82.88
Source Files on build 2086
Coverage ∆ File Lines Relevant Covered Missed Hits/Line