bigdatagenomics / adam / 2728

DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2728

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jenkins

fnothaft 
[ADAM-1324] Deep rewrite of shuffleRegionJoin, adding sorted knowledge to GenomicRDD

250 of 250 new or added lines in 14 files covered. (100.0%)

5384 of 6477 relevant lines covered (83.12%)

6.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
50.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ManualRegionPartitioner.scala
1
98.28
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
91.53
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
83.33
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMParquetInputFormat.scala
9
81.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
23
69.07
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
88.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
1
91.53
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
5
85.45
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
14
73.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
18
84.03
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
37
84.98
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
64
69.07
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
68
81.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2728.1 251
82.75
2 2728.2 251
82.75
3 2728.3 251
82.77
4 2728.4 251
82.85
5 2728.5 251
82.77
6 2728.6 251
82.83
7 2728.7 251
82.83
8 2728.8 251
82.85
Source Files on build 2728
Coverage ∆ File Lines Relevant Covered Missed Hits/Line