bigdatagenomics / adam / 2083
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 55s
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2083

Pull #1557

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/0e1743bbfa7915f135831008e7a71947e5b72614">0e1743bbf<a href="https://github.com/bigdatagenomics/adam/commit/0e1743bbfa7915f135831008e7a71947e5b72614">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/d1d84dc912c06e005e786ec329feda136ac2e1e1">d1d84dc91</a>">d1d84dc91</a><a href="https://github.com/bigdatagenomics/adam/commit/0e1743bbfa7915f135831008e7a71947e5b72614"> into b7762c2b3">b7762c2b3</a>
Pull Request #1557: Add loadSequenceDictionary to ADAM context.

31 of 31 new or added lines in 6 files covered. (100.0%)

5336 of 6415 relevant lines covered (83.18%)

6.65 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
5
79.71
 0.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
93.75
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
1
56.83
 0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
96.63
 3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
84.4
 3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
84.06
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
86.96
 -3.04% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
75.93
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
62.34
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
73.33
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
23
83.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
49
79.71
 0.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2083.1 252
83.09
2 2083.2 252
83.09
3 2083.3 252
83.07
4 2083.4 252
83.07
5 2083.5 252
83.06
6 2083.6 252
83.07
7 2083.7 252
83.06
8 2083.8 252
83.07
Source Files on build 2083
Coverage ∆ File Lines Relevant Covered Missed Hits/Line