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bigdatagenomics / avocado / 193
81%
master: 91%

Build:
LAST BUILD BRANCH: adam-0.25.0
DEFAULT BRANCH: master
Ran 03 Jun 2017 02:23AM UTC
Jobs 4
Files 26
Run time 1min
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3 Jun 2017 - 1:28 coverage: 80.539% (-3.5%) from 84.055%
193

Pull #229

jenkins

9181eb84f9c35729a3bad740fb7f9d93?size=18&default=identiconweb-flow
<a href="https://github.com/bigdatagenomics/avocado/commit/<a class=hub.com/bigdatagenomics/avocado/commit/9c9a6656b3bcfae4c65e0846c3b376e399c5e46e">9c9a6656b<a href="https://github.com/bigdatagenomics/avocado/commit/9c9a6656b3bcfae4c65e0846c3b376e399c5e46e">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/avocado/commit/<a class="double-link" href="https://github.com/bigdatagenomics/avocado/commit/dd1803ad3ce970ffe52e4016e12367b466670b8f">dd1803ad3</a>">dd1803ad3</a><a href="https://github.com/bigdatagenomics/avocado/commit/9c9a6656b3bcfae4c65e0846c3b376e399c5e46e"> into edbbfca0b">edbbfca0b</a>
Pull Request #229: [AVOCADO-222] Add code to process high allelic fraction het calls.

27 of 32 new or added lines in 3 files covered. (84.38%)

43 existing lines in 5 files now uncovered.

1105 of 1372 relevant lines covered (80.54%)

3.22 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
95.83
avocado-core/src/main/scala/org/bdgenomics/avocado/util/RewriteHets.scala
4
0
0% avocado-cli/src/main/scala/org/bdgenomics/avocado/cli/BiallelicGenotyper.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
75.76
-3.03% avocado-core/src/main/scala/org/bdgenomics/avocado/realigner/Realigner.scala
4
91.67
4.17% avocado-core/src/main/scala/org/bdgenomics/avocado/genotyping/DiscoverVariants.scala
8
0
0% avocado-cli/src/main/scala/org/bdgenomics/avocado/cli/AvocadoMain.scala
11
94.76
4.08% avocado-core/src/main/scala/org/bdgenomics/avocado/genotyping/BiallelicGenotyper.scala
19
57.41
-25.64% avocado-core/src/main/scala/org/bdgenomics/avocado/models/Observation.scala
Jobs
ID Job ID Ran Files Coverage
1 193.1 03 Jun 2017 02:23AM UTC 37
80.54
2 193.2 03 Jun 2017 02:24AM UTC 37
80.54
3 193.3 03 Jun 2017 02:24AM UTC 37
80.54
4 193.4 03 Jun 2017 02:24AM UTC 37
80.54
Source Files on build 193
  • List 26
  • Changed 14
  • Source Changed 7
  • Coverage Changed 14
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
  • Back to Repo
  • Jenkins Build #193
  • Pull Request #229
  • PR Base - master (#3005)
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