bigdatagenomics / adam / 2078
85%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2078

Pull #1397

jenkins

fnothaft 
First unit test passing.
Pull Request #1397: WIP R API

5676 of 7179 relevant lines covered (79.06%)

6.25 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
56.83
 0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
96.63
 3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
97.3
 4.99% adam-core/src/main/scala/org/bdgenomics/adam/models/Coverage.scala
1
99.24
 0.06% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
74.07
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
63.64
 -6.06% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
3
93.2
 -0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
4
87.88
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
4
92.31
 1.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
7
73.33
 -16.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
8
60.0
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAMMain.scala
8
90.41
 0.76% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
12
66.67
 -22.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
15
78.38
 -6.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
21
72.5
 -0.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
29
87.32
 7.96% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
31
80.5
 -3.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
53
80.7
 -3.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
64
71.3
 5.8% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2078.1 273
78.21
2 2078.2 273
78.21
3 2078.3 273
78.2
4 2078.4 273
78.2
5 2078.5 272
78.03
6 2078.6 272
78.03
7 2078.7 272
78.02
8 2078.8 272
78.02
Source Files on build 2078
Coverage ∆ File Lines Relevant Covered Missed Hits/Line