bigdatagenomics / adam / 2077
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2077

Pull #1324

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/d34554d6dc24e083251905ee6999cd634377d4da">d34554d6d<a href="https://github.com/bigdatagenomics/adam/commit/d34554d6dc24e083251905ee6999cd634377d4da">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/536b9362ab1fc277551fd1d0979087bb7302a32b">536b9362a</a>">536b9362a</a><a href="https://github.com/bigdatagenomics/adam/commit/d34554d6dc24e083251905ee6999cd634377d4da"> into bbd695e9a">bbd695e9a</a>
Pull Request #1324: Efficient Joins and (re)Partitioning

249 of 249 new or added lines in 14 files covered. (100.0%)

5329 of 6454 relevant lines covered (82.57%)

6.56 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
50.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ManualRegionPartitioner.scala
1
98.28
 0.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
90.74
 -0.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
83.33
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMParquetInputFormat.scala
2
82.61
 -7.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
9
81.96
 2.61% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
23
69.42
 3.91% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
95.51
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
98.46
 1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
64.94
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
84.98
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
84.4
 3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
82.61
 -7.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
2
56.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
74.07
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
90.74
 -0.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
11
62.07
 -27.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2077.1 251
82.06
2 2077.2 251
82.04
3 2077.3 251
82.04
4 2077.4 251
82.06
5 2077.5 251
82.06
6 2077.6 251
82.04
7 2077.7 251
82.04
8 2077.8 251
82.06
Source Files on build 2077
Coverage ∆ File Lines Relevant Covered Missed Hits/Line