bigdatagenomics / adam / 2076
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 152
Run time 1min
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2076

Pull #1324

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/d85f401039fe6b2e1eb0b1c34403b4e45b25f05e">d85f40103<a href="https://github.com/bigdatagenomics/adam/commit/d85f401039fe6b2e1eb0b1c34403b4e45b25f05e">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/f15fe551bf3645bb38c4f4aec5219f322d67bbc0">f15fe551b</a>">f15fe551b</a><a href="https://github.com/bigdatagenomics/adam/commit/d85f401039fe6b2e1eb0b1c34403b4e45b25f05e"> into fc3e5fdb0">fc3e5fdb0</a>
Pull Request #1324: Efficient Joins and (re)Partitioning

249 of 249 new or added lines in 14 files covered. (100.0%)

5302 of 6419 relevant lines covered (82.6%)

6.56 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
50.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ManualRegionPartitioner.scala
1
90.74
 -1.57% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
83.33
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMParquetInputFormat.scala
2
96.55
 -2.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
82.61
 0.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
9
81.96
 2.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
23
69.42
 3.48% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
91.26
 1.07% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
82.61
 0.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
1
88.35
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
90.74
 -1.57% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
93.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
84.4
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
63.64
 5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
5
62.07
 1.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
8
90.34
 0.62% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
11
85.38
 0.91% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
13
73.24
 0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
51
69.42
 3.48% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
69
81.96
 2.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2076.1 252
81.96
2 2076.2 252
81.98
3 2076.3 252
81.96
4 2076.4 252
81.98
5 2076.5 252
82.02
6 2076.6 252
82.04
7 2076.7 252
82.02
8 2076.8 252
82.04
Source Files on build 2076
Coverage ∆ File Lines Relevant Covered Missed Hits/Line