bigdatagenomics / adam / 2713

DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 1min
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2713

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jenkins

fnothaft 
Adding fragment InFormatter for Bowtie tab5 format

25 of 25 new or added lines in 2 files covered. (100.0%)

5232 of 6365 relevant lines covered (82.2%)

6.57 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
90.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
85.32
 0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
95.51
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
61.73
 1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
66.38
 0.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
79.82
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
67.31
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
56.28
 0.55% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
79.85
 1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
2
63.64
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
91.67
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
88.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
Jobs
ID Job ID Ran Files Coverage
1 2713.1 250
82.04
2 2713.2 250
82.03
3 2713.3 250
82.04
4 2713.4 250
82.03
5 2713.5 250
82.11
6 2713.6 250
82.12
7 2713.7 250
82.11
8 2713.8 250
82.12
Source Files on build 2713
Coverage ∆ File Lines Relevant Covered Missed Hits/Line