bigdatagenomics / adam / 2711

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Ran
Jobs 1
Files 149
Run time 13s
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jenkins

heuermh 
[ADAM-1359] Merge `reads2fragments` and `fragments2reads` into `transformFragments`

Resolves #1359. Also, propegates the quality score binner (#1485) up to the
`transformFragments` CLI.

45 of 45 new or added lines in 1 file covered. (100.0%)

5185 of 6340 relevant lines covered (81.78%)

0.82 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
95.56
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFragments.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
87.38
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
44.44
 -11.11% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichVariant.scala
4
53.55
 -2.19% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
5
68.52
 -9.26% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
8
60.0
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAMMain.scala
Jobs
ID Job ID Ran Files Coverage
1 2711.1 249
81.78
Source Files on build 2711
Coverage ∆ File Lines Relevant Covered Missed Hits/Line