bigdatagenomics / adam / 2070
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 153
Run time 1min
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2070

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/ad7e887d16937e9cbb81449d3b4457193a9c61bc">ad7e887d1<a href="https://github.com/bigdatagenomics/adam/commit/ad7e887d16937e9cbb81449d3b4457193a9c61bc">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/c1598b209565ce221f2fe5cccc0eb9718e9ea5f4">c1598b209</a>">c1598b209</a><a href="https://github.com/bigdatagenomics/adam/commit/ad7e887d16937e9cbb81449d3b4457193a9c61bc"> into fc3e5fdb0">fc3e5fdb0</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

212 of 212 new or added lines in 13 files covered. (100.0%)

5341 of 6484 relevant lines covered (82.37%)

6.58 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
8
86.67
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
10
76.19
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
14
81.09
 2.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
90.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
85.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
1
92.23
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
85.17
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
60.49
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
56.28
 -1.09% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
4
62.34
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
9
87.38
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
10
90.41
 2.14% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
29
84.46
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
62
81.09
 2.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
71
67.65
 2.14% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2070.1 260
82.29
2 2070.2 260
82.28
3 2070.3 260
82.28
4 2070.4 260
82.23
5 2070.5 260
82.29
6 2070.6 260
82.23
7 2070.7 260
82.25
8 2070.8 260
82.25
Source Files on build 2070
Coverage ∆ File Lines Relevant Covered Missed Hits/Line