bigdatagenomics / adam / 2049
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 1min
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2049

Pull #1528

jenkins

fnothaft 
No projection in Reads2Coverage.
Pull Request #1528: [ADAM-1501] Compute coverage using Dataset API.

14 of 14 new or added lines in 2 files covered. (100.0%)

5250 of 6952 relevant lines covered (75.52%)

6.0 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
99.24
 0.06% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
64.94
 6.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
65.63
 -4.07% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
2
88.36
 -1.37% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
81.82
 -6.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
65.38
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
4
72.22
 -5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
50.0
 -8.33% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
5
86.11
 -13.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/SingleReadBucket.scala
5
76.19
 -5.63% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
5
66.67
 -33.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
10
90.1
 -0.1% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
12
77.19
 -7.99% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
14
46.15
 -14.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
16
62.5
 3.24% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
17
82.22
 -1.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
18
48.65
 -5.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
25
64.86
 -7.99% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
35
80.35
 1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
54
80.41
 -4.05% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
59
66.67
 0.73% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2049.1 263
74.94
2 2049.2 263
74.92
3 2049.3 263
74.92
4 2049.4 263
74.94
5 2049.5 264
75.07
6 2049.6 264
75.06
7 2049.7 264
75.07
8 2049.8 264
75.06
Source Files on build 2049
Coverage ∆ File Lines Relevant Covered Missed Hits/Line