bigdatagenomics / adam / 2019
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 1
Files 148
Run time 19s
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2019

Pull #1324

jenkins

devin-petersohn 
Adding ADAMInputFormat class to ensure ordering is maintained
Pull Request #1324: Efficient Joins and (re)Partitioning

233 of 233 new or added lines in 12 files covered. (100.0%)

5116 of 6285 relevant lines covered (81.4%)

0.81 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
82.09
 -0.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
1
78.95
 1.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
2
54.17
 1.99% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
91.49
 2.36% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
3
82.05
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
4
80.22
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
42
67.13
 -2.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
73.91
 -4.35% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
91.26
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
98.31
 0.53% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
54.55
 -0.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala
1
85.0
 0.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
44.44
 -11.11% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichVariant.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
61.25
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
85.17
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
94.38
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
59.74
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
78.95
 1.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
72.22
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
80.73
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
53.93
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
5
84.62
 0.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
6
85.15
 -4.95% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
7
54.17
 1.99% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
9
82.09
 -0.49% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
14
72.06
 0.42% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
39
82.05
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
51
67.13
 -2.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
59
80.22
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2019.1 250
81.4
Source Files on build 2019
Coverage ∆ File Lines Relevant Covered Missed Hits/Line