bigdatagenomics / adam / 2018
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 1min
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2018

Pull #1531

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/d54742d602966a9a7e546cf226c84b69c74af8be">d54742d60<a href="https://github.com/bigdatagenomics/adam/commit/d54742d602966a9a7e546cf226c84b69c74af8be">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/f2b7c3e1bc0f6844539bb41eb0b7c164d9352607">f2b7c3e1b</a>">f2b7c3e1b</a><a href="https://github.com/bigdatagenomics/adam/commit/d54742d602966a9a7e546cf226c84b69c74af8be"> into 7fc5b4fb1">7fc5b4fb1</a>
Pull Request #1531: [ADAM-1530] Support loading GO:query (S/CR/B)AMs as fragments.

8 of 8 new or added lines in 2 files covered. (100.0%)

5145 of 6264 relevant lines covered (82.14%)

6.56 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
97.78
 -1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
84.21
 1.62% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
1
67.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
61.25
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
66.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
85.63
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
92.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
2
69.5
 -0.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
59.74
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
81.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
89.04
 -0.68% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
90.1
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
55.74
 -1.64% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
4
80.1
 1.8% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
72.22
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
Jobs
ID Job ID Ran Files Coverage
1 2018.1 252
82.04
2 2018.2 252
82.02
3 2018.3 252
82.04
4 2018.4 252
82.04
5 2018.5 252
82.06
6 2018.6 252
82.06
7 2018.7 252
82.04
8 2018.8 252
82.02
Source Files on build 2018
Coverage ∆ File Lines Relevant Covered Missed Hits/Line