bigdatagenomics / adam / 1986
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 151
Run time 3min
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1986

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/5ee628dfc8dbbbb42cc748d1f208fbebeea81f71">5ee628dfc<a href="https://github.com/bigdatagenomics/adam/commit/5ee628dfc8dbbbb42cc748d1f208fbebeea81f71">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/9d7e11c3e0ae67ec704cafcb752ac22eb9077ed7">9d7e11c3e</a>">9d7e11c3e</a><a href="https://github.com/bigdatagenomics/adam/commit/5ee628dfc8dbbbb42cc748d1f208fbebeea81f71"> into ea9ce6c9a">ea9ce6c9a</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

217 of 217 new or added lines in 12 files covered. (100.0%)

5164 of 6314 relevant lines covered (81.79%)

6.53 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
7
83.72
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
7
82.05
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
22
78.3
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
55.06
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
85.02
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
91.26
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
65.38
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
62.34
 3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
74.07
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
81.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
4
94.38
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
4
84.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
6
89.11
 1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
8
69.7
 -12.91% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
9
48.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
11
88.35
 0.35% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
12
89.04
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
35
81.43
 -0.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
49
70.87
 0.82% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
65
78.3
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1986.1 258
81.68
2 1986.2 258
81.69
3 1986.3 258
81.68
4 1986.4 258
81.66
5 1986.5 258
81.68
6 1986.6 258
81.66
7 1986.7 258
81.69
8 1986.8 258
81.68
Source Files on build 1986
Coverage ∆ File Lines Relevant Covered Missed Hits/Line