bigdatagenomics / adam / 1985
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 151
Run time 1min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
1985

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/90db26a8fc26ae0b607d70327509a2dac3f69f5b">90db26a8f<a href="https://github.com/bigdatagenomics/adam/commit/90db26a8fc26ae0b607d70327509a2dac3f69f5b">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/df7e7168f3e31633c62472c82f7782943dd54b20">df7e7168f</a>">df7e7168f</a><a href="https://github.com/bigdatagenomics/adam/commit/90db26a8fc26ae0b607d70327509a2dac3f69f5b"> into ea9ce6c9a">ea9ce6c9a</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

218 of 218 new or added lines in 12 files covered. (100.0%)

5152 of 6315 relevant lines covered (81.58%)

6.52 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
11
71.79
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
23
78.05
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
24
45.45
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
97.75
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
80.73
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
80.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
95.35
 1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
77.78
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
55.62
 0.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
96.23
 -3.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
3
63.64
 5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
4
84.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
6
89.11
 1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
9
48.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
9
66.67
 -15.94% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
11
88.35
 0.35% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
13
88.36
 -0.68% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
35
81.43
 -0.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
54
71.84
 1.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
64
78.05
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1985.1 258
81.39
2 1985.2 258
81.41
3 1985.3 258
81.52
4 1985.4 258
81.5
5 1985.5 258
81.39
6 1985.6 258
81.41
7 1985.7 258
81.52
8 1985.8 258
81.5
Source Files on build 1985
Coverage ∆ File Lines Relevant Covered Missed Hits/Line