bigdatagenomics / avocado / 3044
91%

DEFAULT BRANCH: master
Ran
Jobs 4
Files 25
Run time 14s
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3044

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jenkins

fnothaft 
Precompute likelihoods and join to observations.

Provides a >2x speedup in genotyping performance.

105 of 105 new or added lines in 4 files covered. (100.0%)

1013 of 1273 relevant lines covered (79.58%)

3.18 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
75.76
 -3.03% avocado-core/src/main/scala/org/bdgenomics/avocado/realigner/Realigner.scala
1
88.14
 -1.69% avocado-core/src/main/scala/org/bdgenomics/avocado/genotyping/TrioCaller.scala
5
89.58
 2.08% avocado-core/src/main/scala/org/bdgenomics/avocado/genotyping/DiscoverVariants.scala
9
67.8
 -15.25% avocado-core/src/main/scala/org/bdgenomics/avocado/models/Observation.scala
10
93.82
 3.14% avocado-core/src/main/scala/org/bdgenomics/avocado/genotyping/BiallelicGenotyper.scala
Jobs
ID Job ID Ran Files Coverage
1 3044.1 36
79.58
2 3044.2 36
79.58
3 3044.3 36
79.58
4 3044.4 36
79.58
Source Files on build 3044
Coverage ∆ File Lines Relevant Covered Missed Hits/Line