bigdatagenomics / adam / 2642

DEFAULT BRANCH: master
Ran
Jobs 8
Files 148
Run time 1min
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2642

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jenkins

heuermh 
[ADAM-1502] Preserve contig ordering in TwoBitFile sequence dictionary.

Resolves #1502.

5046 of 6170 relevant lines covered (81.78%)

6.53 hits per line

Coverage Regressions

Lines Coverage ∆ File
12
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
5
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
Jobs
ID Job ID Ran Files Coverage
1 2642.1 0
81.69
2 2642.2 0
81.69
3 2642.3 0
81.67
4 2642.4 0
81.67
5 2642.5 0
81.65
6 2642.6 0
81.65
7 2642.7 0
81.67
8 2642.8 0
81.67
Source Files on build 2642
Detailed source file information is not available for this build.